Yayınlar & Eserler

Yayın Ağı
Makaleler 61
Tümü (61)
SCI-E, SSCI, AHCI (55)
SCI-E, SSCI, AHCI, ESCI (57)
ESCI (2)
Scopus (57)
Diğer Yayınlar (4)

1. A global initiative on addressing bioinformatics' grand challenges

KHAN M. A., Işlk E. B., Tan T. W.
Briefings in Bioinformatics , cilt.25, sa.4, 2024 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

2. A Systematic Bioinformatics Approach for Mapping the Minimal Set of a Viral Peptidome

Chong L. C., KHAN M. A.
Current Protocols , cilt.4, sa.6, 2024 (ESCI, Scopus) identifier identifier identifier

3. Whole-Exome Sequencing Identifies Mutation Profile and Mutation Signature-Based Clustering Associated with Prognosis in Appendiceal Pseudomyxoma Peritonei

Hussein N., Rajasuriar R., Khan A. M., Lim Y. A., Gan G. G.
MOLECULAR CANCER RESEARCH , cilt.22, sa.1, ss.70-81, 2024 (SCI-Expanded, Scopus) identifier identifier identifier

4. Editorial: 21st International Conference on Bioinformatics (InCoB 2022)-accelerating innovation to meet biological challenges: the role of bioinformatics

Khan A. M., Singh H., Ranganathan S., Gojobori T., Gao X.
FRONTIERS IN GENETICS , cilt.15, 2024 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

5. Grand challenges in bioinformatics education and training

IŞIK E. B., Brazas M. D., Schwartz R., Gaeta B., Palagi P. M., van Gelder C. W. G., et al.
Nature Biotechnology , cilt.41, sa.8, ss.1171-1174, 2023 (SCI-Expanded, Scopus) identifier identifier identifier

6. Identification of Genetic Alterations in Rapid Progressive Glioblastoma by Use of Whole Exome Sequencing.

Khan I., Işık E. B., Mahfooz S., Khan A. M., Hatiboglu M. A.
Diagnostics (Basel, Switzerland) , cilt.13, sa.6, 2023 (SCI-Expanded, Scopus) identifier identifier identifier

7. Genomic analysis and biological characterization of a novel Schitoviridae phage infecting Vibrio alginolyticus

Tajuddin S., Khan A. M., Chong L. C., Wong C. L., Tan J. S., Ina-Salwany M. Y., et al.
Applied Microbiology and Biotechnology , cilt.107, sa.2-3, ss.749-768, 2023 (SCI-Expanded, Scopus) identifier identifier identifier

8. The role of the gut microbiome in hematological cancers

Hussein N., Rajasuriar R., Khan A. M., Lim Y. A., Gan G. G.
Molecular Cancer Research , cilt.21, sa.11, 2023 (SCI-Expanded, Scopus) identifier identifier

9. Human ACE2 orthologous peptide sequences show better binding affinity to SARS-CoV-2 RBD domain: Implications for drug design

Mahmoudi Azar L., Öncel M. M., KARAMAN E., Soysal L. F., FATIMA A., Choi S. B., et al.
Computational and Structural Biotechnology Journal , cilt.21, ss.4096-4109, 2023 (SCI-Expanded, Scopus) identifier identifier identifier

10. Negligible peptidome diversity of SARS-CoV-2 and its higher taxonomic ranks

Chong L. C., Khan M. A.
bioRxiv , cilt.10, ss.1-12, 2022 (Hakemsiz Dergi) Sürdürülebilir Kalkınma

11. Historical milestone in 42 years of viral sequencing-Impetus for a community-driven sequencing of global priority pathogens

Chong L. C., KHAN M. A.
FRONTIERS IN MICROBIOLOGY , cilt.13, 2022 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

12. UNIQmin, an alignment-free tool to study viral sequence diversity across taxonomic lineages: a case study of monkeypox virus

Chong L. C., Khan M. A.
bioRxiv , cilt.8, ss.1-44, 2022 (Hakemsiz Dergi)

13. DiMA: Sequence Diversity Dynamics Analyser for Viruses

Tharanga S., Hu Y., Unlu E. S., Sjaugi M. F., Celik M. A., Hekimoglu H., et al.
arXiv , cilt.2205, sa.13915, ss.1-17, 2022 (Hakemsiz Dergi)

14. Editorial: Bioinformatics and the Translation of Data-Driven Discoveries

KHAN M. A., Ranganathan S., Suravajhala P.
FRONTIERS IN GENETICS , cilt.13, 2022 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

15. Computational design and characterization of a multiepitope vaccine against carbapenemase-producing Klebsiella pneumoniae strains, derived from antigens identified through reverse vaccinology

Cuscino N., Fatima A., Di Pilato V., Bulati M., Alfano C., Monaca E., et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL , cilt.20, ss.4446-4463, 2022 (SCI-Expanded, Scopus) identifier

16. A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences.

James S. A., Ong H. S., Hari R., Khan A. M.
BMC genomics , cilt.22, sa.Suppl 3, ss.700, 2021 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

17. An Alignment-Independent Approach for the Study of Viral Sequence Diversity at Any Given Rank of Taxonomy Lineage

Chong L. C., Lim W. L., Ban K. H. K., Khan A. M.
BIOLOGY-BASEL , cilt.10, sa.9, 2021 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

18. Absence of BapA type III effector protein affects Burkholderia pseudomallei intracellular lifecycle in human host cells

Choh L., Ong G., Chua E., Vellasamy K. M., Mariappan V., Khan A. M., et al.
PROCESS BIOCHEMISTRY , cilt.108, ss.48-59, 2021 (SCI-Expanded, Scopus) identifier identifier

19. Avian Influenza H7N9 Virus Adaptation to Human Hosts.

Tan S., Sjaugi M. F., Fong S. C., Chong L. C., Abd Raman H. S., Nik Mohamed N. E., et al.
Viruses , cilt.13, sa.5, 2021 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

20. Developing critical thinking inSTEMeducation through inquiry-based writing in the laboratory classroom

Jeon A., Kellogg D., Khan M. A., Tucker-Kellogg G.
BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION , cilt.49, sa.1, ss.140-150, 2021 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

21. Correlation of host inflammatory cytokines and immune-related metabolites, but not viral NS1 protein, with disease severity of dengue virus infection

Soe H. J., Manikam R., Raju C. S., Khan M. A., Sekaran S. D.
PLOS ONE , cilt.15, sa.8, 2020 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

22. Dynamics of Influenza A (H5N1) virus protein sequence diversity

Abd Raman H. S., Tan S., August J. T., Khan A. M.
PEERJ , cilt.7, 2020 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

23. Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

Chong L. C., Khan A. M.
BMC GENOMICS , cilt.20, 2019 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

24. Advancing Personalized Medicine Through the Application of Whole Exome Sequencing and Big Data Analytics

Suwinski P., Ong C., Ling M. H. T., Poh Y. M., Khan A. M., Ong H. S.
FRONTIERS IN GENETICS , cilt.10, 2019 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

25. Mapping HLA-A2,-A3 and-B7 supertype-restricted T-cell epitopes in the ebolavirus proteome

Lim W. C., Khan A. M.
BMC GENOMICS , cilt.19, 2018 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

26. High dengue virus load differentially modulates human microvascular endothelial barrier function during early infection

Soe H. J., Khan A. M., Manikam R., Raju C. S., Vanhoutte P., Sekaran S. D.
JOURNAL OF GENERAL VIROLOGY , cilt.98, sa.12, ss.2993-3007, 2017 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma identifier identifier identifier

27. Analysis of viral diversity for vaccine target discovery

Khan A. M., Hu Y., Miotto O., Thevasagayam N. M., Sukumaran R., Raman H. S. A., et al.
BMC MEDICAL GENOMICS , cilt.10, 2017 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma identifier identifier identifier

28. African Trypanosome-Induced Blood-Brain Barrier Dysfunction under Shear Stress May Not Require ERK Activation

Sumpio B. J., Chitragari G., Moriguchi T., Shalaby S., Pappas-Brown V., Khan A. M., et al.
INTERNATIONAL JOURNAL OF ANGIOLOGY , cilt.24, sa.1, ss.41-46, 2015 (ESCI, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

29. g-FLUA2H: a web-based application to study the dynamics of animal-to-human mutation transmission for influenza viruses

Sjaugi M. F., Tan S., Abd Raman H. S., Lim W. C., Mohamed N. E. N., August J. T., et al.
BMC MEDICAL GENOMICS , cilt.8, 2015 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

30. STATdb: A Specialised Resource for the STATome

Patro C. P. K., Khan A. M., Tan T. W., Fu X.
PLOS ONE , cilt.9, sa.8, 2014 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

31. Lack of Clinical Manifestations in Asymptomatic Dengue Infection Is Attributed to Broad Down-Regulation and Selective Up-Regulation of Host Defence Response Genes

Yeo A. S. L., Azhar N. A., Yeow W., Talbot C. C., Khan M. A., Shankar E. M., et al.
PLOS ONE , cilt.9, sa.4, 2014 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

32. First Global Assessment of Circulating microRNAs as Diagnostic and Prognostic Biomarkers for Diabetic Retinopathy.

Khan M. A.
Arvo Journals , cilt.55, ss.1, 2014 (Hakemli Dergi) Sürdürülebilir Kalkınma

33. APBioNet-Transforming Bioinformatics in the Asia-Pacific Region

KHAN M. A., Tan T. W., Schoenbach C., Ranganathan S.
PLOS COMPUTATIONAL BIOLOGY , cilt.9, sa.10, 2013 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

34. Identification of Conserved and HLA Promiscuous DENV3 T-Cell Epitopes

Nascimento E. J. M., Mailliard R. B., KHAN M. A., Sidney J., Sette A., Guzman N., et al.
PLOS NEGLECTED TROPICAL DISEASES , cilt.7, sa.10, 2013 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

35. Simple re-instantiation of small databases using cloud computing

Tan T. W., Xie C., De Silva M., Lim K. S., Patro C. P. K., Lim S. J., et al.
BMC GENOMICS , cilt.14, 2013 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

36. Dissecting the Dynamics of HIV-1 Protein Sequence Diversity

Hu Y., Tan P. T., Tan T. W., August J. T., KHAN M. A.
PLOS ONE , cilt.8, sa.4, 2013 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

37. Cytokine Expression Profile of Dengue Patients at Different Phases of Illness

Rathakrishnan A., Wang S. M., Hu Y., KHAN M. A., Ponnampalavanar S., Lum L. C. S., et al.
PLOS ONE , cilt.7, sa.12, 2012 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

38. West Nile Virus T-Cell Ligand Sequences Shared with Other Flaviviruses: a Multitude of Variant Sequences as Potential Altered Peptide Ligands

Jung K., KHAN M. A., Tan B. Y. L., Hu Y., Simon G. G., Nascimento E. J. M., et al.
JOURNAL OF VIROLOGY , cilt.86, sa.14, ss.7616-7624, 2012 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

39. Highly conserved influenza A sequences as T cell epitopes-based vaccine targets to address the viral variability

Tan P. T., KHAN M. A., August J. T.
HUMAN VACCINES , cilt.7, sa.4, ss.402-409, 2011 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma identifier identifier identifier

40. Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi)

Tan T. W., Tong J. C., KHAN M. A., de Silva M., Lim K. S., Ranganathan S.
BMC GENOMICS , cilt.11, 2010 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

41. T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System

Tay D. M. M., Govindarajan K. R., KHAN M. A., Ong T. Y. R., Samad H. M., Soh W. W., et al.
BMC BIOINFORMATICS , cilt.11, 2010 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

42. Cheminformatics-Based Drug Design Approach for Identification of Inhibitors Targeting the Characteristic Residues of MMP-13 Hemopexin Domain

Kothapalli R., KHAN M. A., Basappa B., Gopalsamy A., Chong Y. S., Annamalai L.
PLOS ONE , cilt.5, sa.8, 2010 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

43. Classification of Dengue Fever Patients Based on Gene Expression Data Using Support Vector Machines

Gomes A. L. V., Wee L. J. K., KHAN M. A., Gil L. H. V. G., Marques E. T. A., Calzavara-Silva C. E., et al.
PLOS ONE , cilt.5, sa.6, 2010 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

44. Dendritic Cell Mediated Delivery of Plasmid DNA Encoding LAMP/HIV-1 Gag Fusion Immunogen Enhances T Cell Epitope Responses in HLA DR4 Transgenic Mice

Simon G. G., Hu Y., KHAN M. A., Zhou J., Salmon J., Chikhlikar P. R., et al.
PLOS ONE , cilt.5, sa.1, 2010 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

45. A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era.

Tan T. W., Lim S. J., Khan A. M., Ranganathan S.
BMC genomics , 2009 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

46. Conservation and Variability of West Nile Virus Proteins

Koo Q. Y., KHAN M. A., Jung K., Ramdas S., Miotto O., Tan T. W., et al.
PLOS ONE , cilt.4, sa.4, 2009 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

47. The implementation of e-learning tools to enhance undergraduate bioinformatics teaching and learning: a case study in the National University of Singapore

Lim S. J., KHAN M. A., De Silva M., Lim K. S., Hu Y., Tan C. H., et al.
BMC BIOINFORMATICS , cilt.10, 2009 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

48. Conservation and Variability of Dengue Virus Proteins: Implications for Vaccine Design

KHAN M. A., Miotto O., Nascimento E. J. M., Srinivasan K. N., Heiny A. T., Zhang G. L., et al.
PLOS NEGLECTED TROPICAL DISEASES , cilt.2, sa.8, 2008 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

49. Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

Zhang G. L., KHAN M. A., Srinivasan K. N., Heiny A. T., Lee K. X., Kwoh C. K., et al.
BMC BIOINFORMATICS , cilt.9, 2008 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

50. Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries

Sangket U., Phongdara A., Chotigeat W., Nathan D., Kim W., Bhak J., et al.
BIOINFORMATICS , cilt.24, sa.2, ss.299-301, 2008 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

51. Evolutionarily Conserved Protein Sequences of Influenza A Viruses, Avian and Human, as Vaccine Targets

Heiny A. T., Miotto O., Srinivasan K. N., KHAN M. A., Zhang G. L., Brusic V., et al.
PLOS ONE , cilt.2, sa.11, 2007 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

52. A systematic bioinformatics approach for selection of epitope-based vaccine targets

KHAN M. A., Miotto O., Heiny A. T., Salmon J., Srinivasan K. N., Nascimento E. J. M., et al.
CELLULAR IMMUNOLOGY , cilt.244, sa.2, ss.141-147, 2006 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

53. Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus

KHAN M. A., Heiny A. T., Lee K. X., Srinivasan K. N., Tan T. W., August J. T., et al.
BMC BIOINFORMATICS , cilt.7, 2006 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

54. Neural models for predicting viral vaccine targets.

Zhang G. L., Khan A. M., Srinivasan K. N., August J. T., Brusic V.
Journal of bioinformatics and computational biology , cilt.3, ss.1207-25, 2005 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma identifier identifier

55. MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

Zhang G., KHAN M. A., Srinivasan K., August J., Brusic V.
NUCLEIC ACIDS RESEARCH , cilt.33, 2005 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

56. Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach

Siew J., KHAN M. A., Tan P., Koh J., Seah S., Koo C., et al.
BIOINFORMATICS , cilt.20, sa.18, ss.3466-3480, 2004 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

57. Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens

Srinivasan K. N., Zhang G. L., KHAN M. A., August J. T., Brusic V.
BIOINFORMATICS , cilt.20, ss.297-302, 2004 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

58. CysView: protein classification based on cysteine pairing patterns

Lenffer J., Lai P., El Mejaber W., KHAN M. A., Koh J., Tan P., et al.
NUCLEIC ACIDS RESEARCH , cilt.32, 2004 (SCI-Expanded, Scopus) identifier identifier identifier

59. ANTIMIC: a database of antimicrobial sequences

Brahmachary M., Krishnan S., Koh J., KHAN M. A., Seah S., Tan T., et al.
NUCLEIC ACIDS RESEARCH , cilt.32, 2004 (SCI-Expanded, Scopus) identifier identifier identifier

60. Molecular evolution and phylogeny of elapid snake venom three-finger toxins

Fry B., Wuster W., Kini R., Brusic V., KHAN M. A., Venkataraman D., et al.
JOURNAL OF MOLECULAR EVOLUTION , cilt.57, sa.1, ss.110-129, 2003 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

61. Bioinformatics for venom and toxin sciences.

Tan P. T. J., Khan A. M., Brusic V.
Briefings in bioinformatics , cilt.4, ss.53-62, 2003 (SCI-Expanded, Scopus) Creative Commons License identifier identifier
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 3

1. Temporal and antigenic analysis of dengue virus serotype 1 genome polyprotein sequences

Rajapakse M., Veeramani A., Gopalakrishnan K., Ananthanarayan S., Khan A. M., Srinivasan K. N., et al.
International Conference on Biomedical and Pharmaceutical Engineering, Singapore, Singapur, 11 - 14 Aralık 2006, ss.1947-1386, (Tam Metin Bildiri) Sürdürülebilir Kalkınma

2. Duplicate Detection in Biological Data using Association

Koh J. L., Lee M. L., Khan M. A., Tan P. T., Brusic V.
2nd European Workshop on Data Mining and Text Mining for Bioinformatics, Piacenza, İtalya, 24 - 26 Eylül 2004, ss.35-41, (Tam Metin Bildiri)

3. BioWare: A framework for bioinformatics data retrieval, annotation and publishing

Koh J. L., Krishnan S., Hong S. S., Tan P. T., Khan M. A., Lee M. L., et al.
27th Annual International ACM SIGIR Conference on Research and Development in IR, Sheffield, Birleşik Krallık, 29 - 31 Temmuz 2004, ss.1-9, (Tam Metin Bildiri)
Metrikler

Yayın

67

Yayın (WoS)

58

Yayın (Scopus)

58

Atıf (WoS)

1479

H-İndeks (WoS)

19

Atıf (Scopus)

1695

H-İndeks (Scopus)

21

Atıf (Scholar)

47

H-İndeks (Scholar)

2

Proje

37

Fikri Mülkiyet

1

Tez Danışmanlığı

1

Açık Erişim

42
BM Sürdürülebilir Kalkınma Amaçları